Couple things;
Only Thunderbird AFTER 1998(?) are 6 speed, all previous Thunderbird/Legend/Adv. are 5 speed with a blanking sleeve in place of the 6th gear, otherwise transmissions are quite identical, even, (as I recall), in both 3 and 4 cyl models up to 1998. TBS are 1998-on, so 6 speed. Remember, they were attempting to cheaply and simply, make as many variations of models as possible- "modularity".
1998 saw running changes, so check part numbers!
You can check part numbers on "Pandora" or "Hermy's" Triumph website. A hot weather roadside breakdown last season on my 1996 Thunderbird led to a search for igniter, (ECU), - (turned out to be pick-up coil), and igniters are $$$$$$$$!!!! (from memory about $400+) and they are DIFFERENT between years and Thunderbird vs TBS. ignition curve, timing, etc is likely different. Also, (from memory) they changed ignition suppliers around 1998. This, along with possibly cams, intake boots, exhaust differences, etc, accounts for the 15HP or so difference between Thunderbird/Legend/Adv. and TBS