The three stator wires connect directly one each to the three Powerbox Yellow wires. No need to use the White/Green and Green/Yellow wires in the harness.
Yes. As
@grandpaul posted, the coils are connected in series to the Boyer-Bransden "Transistor Box". If you want to understand better, KIT00052's fitting instructions and wiring diagram are online
on Boyer-Bransden's website here.
NO!
The smaller "Boyer" coils are specifically intended for the Boyer-Bransden MicroPower e.i., which works completely differently from MicroMarkIV ("Boyer Bransden kit 00052"). Those smaller coils have very low internal resistance ("impedance"); if they're used with a Mk.4 (or MicroDigital), the Transistor Box will be toast instantly it's powered-up. Bransden would supply a new Box, for another £100 ...
If you're buying direct from Bransden, just tell whoever you speak to you want two 6V coils for the KIT00052 you're ordering.
The Powerbox replaces the rectifier and the Zener diode. The electronic ignition replaces points and auto-advance unit; then, because the points are gone, the condensers aren't required.
Neither Powerbox nor e.i. replace the flasher unit.
Good luck getting it to fit ...
Original '76 harnesses had PVC-insulated wires and were wrapped in plastic harness tape. The "Lucas" that made your bike's original harness had stopped wrapping harnesses in braid years before your bike was built.
Exact copies of your bike's original harness are made by
Autosparks and retailed by TMS, or another maker and retailed by
L.P. Williams.
Otoh, "Genuine Lucas" is a marketing scam that's been running for about six years between Wassell and the company that took over the original Lucas company in about 1979. Wassell has licensed exclusive use of the "Lucas" branding and packaging, which Wassell uses to give its usually poor-quality parts a veneer of respectability.
Turning back to KIT00052, when you come to fit it, I advise against following some of Bransden's connection instructions - my advice is based on fixing many of them for other owners at various roadsides and campsites across Europe, and a Mk.3 fitted to one of my Triumphs for about 20 years:-
. I connect the Transistor Box Red wire directly to the battery +ve terminal (extending the wire if necessary). Any electrical circuit is between the two battery terminals, the Box White wire is connected to battery -ve through insulated wires and connectors so I've never understood the logic of connecting the Box Red wire to battery +ve with the frame and various uninsulated and corroded or well-painted bits of bike (none of the latter conduct electricity) ...
. The wire from the +ve terminal of the coil labelled "HT1" in the fitting instructions "FIG.1" and "HT2" in the fitting instructions "FIG.3",

I connect either also directly to the battery +ve terminal or at least into the harness Red wires, for the same reasons as the previous paragraph.
. I check for a Red harness wire connected to an engine component (I make and fit if absent) and then use a meter to check for good continuity between engine and battery +ve.
. I fit a 7.5A automotive blade fuse and holder in the Transistor Box White wire - if it's accessible, I use the connection between the Box White wire and (on a bike like yours) the White/Yellow wire from the handlebar kill switch.