Yes, EFI's have a certain window that it can adjust to whatever air / fuel ratio is desired by the ECU.
Depending on what you do to the bike, how much you change the 'breathing' - the EFI will so it's best to adjust to the target set by the ECU. However when you make a change that goes outside of the window, the EFI cannot adjust enough (or fully).
I would do the 12 minute tune, to allow it to settle. (It's on this forum)
Keep an eye for running too lean (see if your pipes change colour near the headers).
If it's all okay, I would ask for a TORS tune at your next service, it'll richen it up a tad for a 'more open' exhaust system - this will allow the EFI to sit more to the middle of the operating window. Possibly adding a bit more ooomph too.
hth
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